{"id":24,"date":"2020-05-31T17:32:03","date_gmt":"2020-05-31T17:32:03","guid":{"rendered":"http:\/\/mlhpc2.peter-zaspel.de\/?page_id=24"},"modified":"2026-01-15T11:59:10","modified_gmt":"2026-01-15T11:59:10","slug":"publications","status":"publish","type":"page","link":"https:\/\/www.peter-zaspel.de\/?page_id=24","title":{"rendered":"Publications"},"content":{"rendered":"\n<h4 class=\"wp-block-heading\">Preprints <\/h4>\n\n\n\n<p>V. Vinod, P. Zaspel. LFaB: Low-fidelity as Bias for Active Learning in the chemical configuration space, arXiv preprint arXiv:2508.15577, <a href=\"https:\/\/doi.org\/10.48550\/arXiv.2508.15577\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.48550\/arXiv.2508.15577<\/a><\/p>\n\n\n\n<p> P. Zaspel and M. G\u00fcnther, &#8220;Data-driven identification of port-Hamiltonian DAE systems by Gaussian processes&#8221;, 2024. arXiv preprint arxiv:2406.18726, <a href=\"https:\/\/doi.org\/10.48550\/arXiv.2406.18726\">https:\/\/doi.org\/10.48550\/arXiv.2406.18726<\/a>.<\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Peer-Reviewed Articles<\/h4>\n\n\n\n<p>K. Shaju, T. Laepple, N. Hirsch, and P. Zaspel: <a href=\"https:\/\/doi.org\/10.5194\/gi-14-459-2025\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.5194\/gi-14-459-2025\">Ice borehole thermometry: sensor placement using greedy optimal sampling<\/a>, Geosci. Instrum. Method. Data Syst., 14, 459\u2013474, <a href=\"https:\/\/doi.org\/10.5194\/gi-14-459-2025\">https:\/\/doi.org\/10.5194\/gi-14-459-2025<\/a>, 2025.<\/p>\n\n\n\n<p>M. Holzenkamp, \u200b\u200bD. Lyu, U. Kleinekath\u00f6fer and P. Zaspel: &#8220;<a href=\"https:\/\/iopscience.iop.org\/article\/10.1088\/2632-2153\/ae09ef\">Evaluation of uncertainty estimations for Gaussian process regression based machine learning interatomic potentials<\/a>.&#8221;,Machine Learning: Science and Technology, 2025. DOI: <a href=\"http:\/\/10.1088\/2632-2153\/ae09ef\" data-type=\"URL\" data-id=\"10.1088\/2632-2153\/ae09ef\">10.1088\/2632-2153\/ae09ef<\/a>; also available as <a href=\"https:\/\/arxiv.org\/abs\/2410.20398\" data-type=\"URL\" data-id=\"https:\/\/arxiv.org\/abs\/2410.20398\">arXiv.2410.20398.<\/a><\/p>\n\n\n\n<p>D. Lyu, M. Holzenkamp, \u200b\u200bV. Vinod, YM Holtkamp, \u200b\u200bS. Maity, C.R. Salazar, U. Kleinekath\u00f6fer and P. Zaspel, &#8220;<a href=\"https:\/\/doi.org\/10.48550\/arXiv.2410.20551\" data-type=\"link\" data-id=\"https:\/\/doi.org\/10.48550\/arXiv.2410.20551\">Excitation Energy Transfer between Porphyrin Dyes on a Clay Surface: A study employing Multifidelity Machine Learning<\/a>.&#8221;, 2024. arXiv:2410.20551, accepted for publication in Advanced Theory and Simulations, May 2025.<\/p>\n\n\n\n<p>V. Vinod and P. Zaspel. <a href=\"https:\/\/doi.org\/10.1063\/5.0272457\">Benchmarking data efficiency in <em>\u0394<\/em>-ML and multifidelity models for quantum chemistry<\/a>. <em>J. Chem. Phys. 163, 024134, 2025<\/em>. DOI: <a href=\"https:\/\/doi.org\/10.1063\/5.0272457\">https:\/<\/a>\/<a href=\"https:\/\/doi.org\/10.1063\/5.0272457\">doi.org\/10.1063\/5.0272457<\/a>; also available as <a href=\"https:\/\/arxiv.org\/abs\/2410.11391\"><em>arXiv:2410.11391<\/em><\/a>.<\/p>\n\n\n\n<p>V. Vinod, and P. Zaspel. <a href=\"https:\/\/doi.org\/10.1038\/s41597-024-04247-3\" data-type=\"URL\" data-id=\"https:\/\/doi.org\/10.1038\/s41597-024-04247-3\">QeMFi: A Multifidelity Dataset of Quantum Chemical Properties of Diverse Molecules<\/a>. <em>Sci Data<\/em> 12, 202, 2025. DOI:<a href=\"https:\/\/doi.org\/10.1038\/s41597-024-04247-3\"> https:\/\/doi.org\/10.1038\/s41597-024-04247-3<\/a>; also available as <a href=\"https:\/\/doi.org\/10.48550\/arXiv.2406.14149\"><em>arXiv:2406.14149<\/em><\/a>.<\/p>\n\n\n\n<p>V. Vinod, D. Lyu, M. Ruth, U. Kleinekath\u00f6fer, P. R. Schreiner, and P. Zaspel. <a href=\"https:\/\/doi.org\/10.1002\/jcc.70056\" data-type=\"URL\" data-id=\"https:\/\/doi.org\/10.1002\/jcc.70056\">Predicting molecular energies of small organic molecules with multifidelity methods. <\/a>J. Comput. Chem., 46: e70056, 2025. DOI:&nbsp; <a href=\"https:\/\/doi.org\/10.1002\/jcc.70056\" data-type=\"URL\" data-id=\"https:\/\/doi.org\/10.1002\/jcc.70056\">https:\/\/doi.org\/10.1002\/jcc.70056<\/a>; also available as <em><a href=\"https:\/\/doi.org\/10.26434\/chemrxiv-2024-9zz16\" data-type=\"URL\" data-id=\"https:\/\/doi.org\/10.26434\/chemrxiv-2024-9zz16\">chemrxiv-2024-9zz16<\/a><\/em>.<\/p>\n\n\n\n<p>V. Vinod and P. Zaspel. <a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jctc.4c01491\">Investigating Data Hierarchies in Multifidelity Machine Learning for Excitation Energies<\/a>. <em>J. Chem. Theory Comput, 21, 6, 3077\u20133091, 2025. DOI: <a href=\"http:\/\/10.1021\/acs.jctc.4c01491\">10.1021\/acs.jctc.4c01491<\/a>; also available as <a href=\"https:\/\/arxiv.org\/abs\/2410.11392\">arXiv:2410.11392<\/a><\/em>.<\/p>\n\n\n\n<p>V. Vinod and P. Zaspel. <a href=\"https:\/\/iopscience.iop.org\/article\/10.1088\/2632-2153\/ad7f25\" data-type=\"URL\" data-id=\"10.1088\/2632-2153\/ad7f25\">Assessing non-nested configurations of multifidelity machine learning for quantum-chemical properties<\/a>. Machine Learning: Science and Technology, 5, 045005, 2024. DOI: <a href=\"http:\/\/doi.org\/10.1088\/2632-2153\/ad7f25\">10.1088\/2632-2153\/ad7f25<\/a>; also available as <em>arXiv:<\/em>2407.17087.<\/p>\n\n\n\n<p>V. Vinod, U. Kleinekath\u00f6fer and P. Zaspel. <a href=\"https:\/\/iopscience.iop.org\/article\/10.1088\/2632-2153\/ad2cef\">Optimized multifidelity machine learning for quantum chemistry.<\/a> Machine Learning: Science and Technology, 5, 015054, 2024. DOI: <a href=\"https:\/\/doi.org\/10.1088\/2632-2153\/ad2cef\" data-type=\"URL\">10.1088\/2632-2153\/ad2cef<\/a>; also available as <a href=\"https:\/\/arxiv.org\/abs\/2312.05661\">arXiv:2312.05661.<\/a><\/p>\n\n\n\n<p>V. Vinod, S. Maity, P. Zaspel and U. Kleinekath\u00f6fer. <a href=\"https:\/\/pubs.acs.org\/doi\/full\/10.1021\/acs.jctc.3c00882\">Multifidelity Machine Learning for Molecular Excitation Energies.<\/a> Journal of Chemical Theory and Computation, 19, 21, 7658\u20137670, 2023. DOI: <a href=\"https:\/\/doi.org\/10.1021\/acs.jctc.3c00882\" data-type=\"URL\">10.1021\/acs.jctc.3c00882<\/a>; also available as <a href=\"http:\/\/arxiv.org\/abs\/2305.11292\">arXiv:2305.11292<\/a>.<\/p>\n\n\n\n<p>D. Maharjan and P. Zaspel. <a href=\"https:\/\/www.dl.begellhouse.com\/journals\/52b74bd3689ab10b,197ac1601136cd11,6057ade358040c6e.html?utm_source=TrendMD&amp;utm_medium=cpc&amp;utm_campaign=Journal_of_Flow_Visualization_and_Image_Processing_TrendMD_0\">Toward data-driven filters in Paraview<\/a>. Journal of Flow Visualization and Image Processing, 29(3):55-72, 2022. DOI: <a href=\"https:\/\/doi.org\/10.1615\/JFlowVisImageProc.2022040189\">10.1615\/JFlowVisImageProc.2022040189<\/a>.<\/p>\n\n\n\n<p>H. Harbrecht, J.D. Jakeman and P. Zaspel. <a href=\"https:\/\/doi.org\/10.4208\/cicp.OA-2020-0060\" target=\"_blank\" rel=\"noreferrer noopener\">Cholesky-Based Experimental Design for Gaussian Process and Kernel-Based Emulation and Calibration<\/a>. Communications in Computational Physics. <em>29<\/em> (4). 1152-1185, 2021. DOI: <a href=\"https:\/\/doi.org\/10.4208\/cicp.OA-2020-0060\">10.4208\/cicp.OA-2020-0060<\/a>.<\/p>\n\n\n\n<p>P. Zaspel, B. Huang, H. Harbrecht and O. A. von Lilienfeld. <a rel=\"noreferrer noopener\" href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jctc.8b00832\" target=\"_blank\">Boosting quantum machine learning models with multi-level combination technique: Pople diagrams revisited<\/a>. Journal of Chemical Theory and Computation, 15(3):1546-1559, 2019. DOI: <a href=\"https:\/\/doi.org\/10.1021\/acs.jctc.8b00832\">10.1021\/acs.jctc.8b00832<\/a>; also available as <a rel=\"noreferrer noopener\" href=\"https:\/\/arxiv.org\/abs\/1808.02799\" target=\"_blank\">arXiv:1808.02799<\/a>.<\/p>\n\n\n\n<p>M. Griebel, Ch. Rieger, and P. Zaspel. <a rel=\"noreferrer noopener\" href=\"http:\/\/www.dl.begellhouse.com\/journals\/52034eb04b657aea,23ab8f375b210514,43b8156354ee0091.html\" target=\"_blank\">Kernel-based stochastic collocation for the random two-phase Navier-Stokes equations<\/a>. International Journal for Uncertainty Quantification, 9(5):471-492 2019. DOI: 10.1615\/Int.J.UncertaintyQuantification.2019029228; also available as <a rel=\"noreferrer noopener\" href=\"https:\/\/arxiv.org\/abs\/1810.11270\" target=\"_blank\">arXiv:1810.11270<\/a>.<\/p>\n\n\n\n<p>P. Zaspel. <a href=\"http:\/\/www.dl.begellhouse.com\/en\/journals\/52034eb04b657aea,434177114a7e2b25,6d520e3923576f76.html\">Ensemble Kalman filters for reliability estimation in perfusion inference<\/a>. International Journal for Uncertainty Quantification, 9(1):15-32, 2019. DOI: 10.1615\/Int.J.UncertaintyQuantification.2018024865; also available as <a rel=\"noreferrer noopener\" href=\"https:\/\/arxiv.org\/abs\/1810.09290\" target=\"_blank\">arXiv:1810.09290<\/a>.<\/p>\n\n\n\n<p>H. Harbrecht and P. Zaspel. <a rel=\"noreferrer noopener\" href=\"https:\/\/link.springer.com\/article\/10.1007\/s10915-018-0807-6\" target=\"_blank\">On the algebraic construction of sparse multilevel approximations of elliptic tensor product problems<\/a>. Journal of Scientific Computing, Springer, 78(2):1272-1290, 2019. DOI: 10.1007\/s10915-018-0807-6; also available as <a rel=\"noreferrer noopener\" href=\"https:\/\/arxiv.org\/abs\/1801.10532\" target=\"_blank\">arXiv:1801.10532.<\/a><\/p>\n\n\n\n<p>P. Zaspel. <a rel=\"noreferrer noopener\" href=\"https:\/\/rdcu.be\/5FEV\" target=\"_blank\">Algorithmic patterns for H matrices on many-core processors<\/a>. Journal of Scientific Computing, Springer, 78(2):1174-1206, 2019. DOI: 10.1007\/s10915-018-0809-4; also available as <a rel=\"noreferrer noopener\" href=\"https:\/\/dmi.unibas.ch\/fileadmin\/user_upload\/dmi\/Forschung\/Mathematik\/Computational_Mathematics\/Zaspel\/2017-12-H_matrices_many_cores-final.pdf\" target=\"_blank\">Preprint 2017-12<\/a>, Fachbereich Mathematik, Universit\u00e4t Basel, Switzerland, 2017 and as <a rel=\"noreferrer noopener\" href=\"https:\/\/arxiv.org\/abs\/1708.09707\" target=\"_blank\">arXiv:1708.09707<\/a> preprint.<\/p>\n\n\n\n<p>P. Zaspel. <a rel=\"noreferrer noopener\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0024379515005418\" target=\"_blank\">Subspace correction methods in algebraic multi-level frames<\/a>. Linear Algebra and its Applications, Vol. 488(1),&nbsp; Jan. 2016, pp. 505-521. DOI: 10.1016\/j.laa.2015.09.026.<\/p>\n\n\n\n<p>D.&nbsp;Pfl\u00fcger, H.-J.&nbsp;Bungartz, M.&nbsp;Griebel, F.&nbsp;Jenko, T.&nbsp;Dannert, M.&nbsp;Heene, A.&nbsp;Parra Hinojosa, C.&nbsp;Kowitz and P.&nbsp;Zaspel: <a rel=\"noreferrer noopener\" href=\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-319-14313-2_48\" target=\"_blank\">EXAHD: An Exa-scalable Two-Level Sparse Grid Approach for Higher-Dimensional Problems in Plasma Physics and Beyond<\/a>. In: Lopes L. et al. (eds) Euro-Par 2014: Parallel Processing Workshops. Euro-Par 2014. Lecture Notes in Computer Science, vol 8806. Springer, Cham, 2014. DOI: 10.1007\/978-3-319-14313-2_48.<\/p>\n\n\n\n<p>P.&nbsp;Zaspel and M.&nbsp;Griebel. <a rel=\"noreferrer noopener\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/abs\/pii\/S0045793012000308\" target=\"_blank\">Solving incompressible two-phase flows on multi-GPU clusters<\/a>. <em>Computer &amp; Fluids<\/em>, 80(0):356 &#8211; 364, 2013. DOI: 10.1016\/j.compfluid.2012.01.021.<\/p>\n\n\n\n<p>P.&nbsp;Zaspel and M.&nbsp;Griebel. <a rel=\"noreferrer noopener\" href=\"https:\/\/ieeexplore.ieee.org\/abstract\/document\/6123441\" target=\"_blank\">Massively parallel fluid simulations on Amazon&#8217;s HPC cloud<\/a>. In <em>Network Cloud Computing and Applications (NCCA), 2011 First International Symposium on<\/em>, pages 73 -78, Nov. 2011. DOI: <a rel=\"noreferrer noopener\" target=\"_blank\" href=\"https:\/\/doi.org\/10.1109\/NCCA.2011.19\">10.1109\/NCCA.2011.19<\/a>.<\/p>\n\n\n\n<p>P.&nbsp;Zaspel and M.&nbsp;Griebel. <a rel=\"noreferrer noopener\" href=\"https:\/\/rdcu.be\/5JFE\" target=\"_blank\">Photorealistic visualization and fluid animation: coupling of Maya with a two-phase Navier-Stokes fluid solver.<\/a> <em>Computing and Visualization in Science<\/em>, 14(8):371-383, 2011. DOI:10.1007\/s00791-013-0188-1.<\/p>\n\n\n\n<p>M.&nbsp;Griebel and P.&nbsp;Zaspel. <a rel=\"noreferrer noopener\" href=\"https:\/\/rdcu.be\/5JFQ\" target=\"_blank\">A multi-GPU accelerated solver for the three-dimensional two-phase incompressible Navier-Stokes equations.<\/a> <em>Computer Science &#8211; Research and Development,<\/em> 25(1-2):65-73, May 2010. DOI: 10.1007\/s00450-010-0111-7.<\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Datasets<\/h4>\n\n\n\n<p>K. Shaju.: Ice borehole thermometry: Sensor placement using greedy optimal sampling, Zenodo [code, data set], <a href=\"https:\/\/doi.org\/10.5281\/zenodo.17849760\">https:\/\/doi.org\/10.5281\/zenodo.17849760<\/a>, 2025.<\/p>\n\n\n\n<p>V. Vinod and P. Zaspel. QeMFi: A Multifidelity Dataset of Quantum Chemical Properties of Diverse Molecules (1.1.0) [Data set]. Zenodo. 2024. <a href=\"https:\/\/zenodo.org\/records\/13925688\">https:\/\/zenodo.org\/records\/13925688<\/a>. <\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Edited Volumes<\/h4>\n\n\n\n<p>V. Heuveline, M. Schick, C. Webster and P. Zaspel. Uncertainty Quantification and High Performance Computing, Dagstuhl Reports, Vol. 6, Issue 9, pp. 59-73.<\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Manuscripts<\/h4>\n\n\n\n<p>H. Harbrecht and P. Zaspel. <a href=\"https:\/\/dmi.unibas.ch\/fileadmin\/user_upload\/dmi\/Forschung\/Mathematik\/Computational_Mathematics\/Zaspel\/2018-11-Multi_GPU_BEM.pdf\">A scalable H-matrix approach for the solution of boundary integral equations on multi-GPU clusters.<\/a> Preprint 2018-11, Fachbereich Mathematik, Universit\u00e4t Basel, Switzerland, 2018. Also available as <a href=\"https:\/\/arxiv.org\/abs\/1806.11558\">arXiv:1806.11558<\/a>.<\/p>\n\n\n\n<p>P. Zaspel. <a href=\"https:\/\/dmi.unibas.ch\/fileadmin\/user_upload\/dmi\/Forschung\/Mathematik\/Computational_Mathematics\/Zaspel\/2017-06-AMG_on_GPU.pdf\">Analysis and parallelization strategies for Ruge-St\u00fcben AMG on many-core processors<\/a>, Preprint 2017-06, Fachbereich Mathematik, Universit\u00e4t Basel, Switzerland, 2017.<br><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Preprints V. Vinod, P. Zaspel. LFaB: Low-fidelity as Bias for Active Learning in the chemical configuration space, arXiv preprint arXiv:2508.15577, https:\/\/doi.org\/10.48550\/arXiv.2508.15577 P. Zaspel and M. G\u00fcnther, &#8220;Data-driven identification of port-Hamiltonian DAE systems by Gaussian processes&#8221;, 2024. arXiv preprint arxiv:2406.18726, https:\/\/doi.org\/10.48550\/arXiv.2406.18726.<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_import_markdown_pro_load_document_selector":0,"_import_markdown_pro_submit_text_textarea":"","_mc_calendar":[],"footnotes":""},"class_list":["post-24","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/www.peter-zaspel.de\/index.php?rest_route=\/wp\/v2\/pages\/24","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.peter-zaspel.de\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.peter-zaspel.de\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.peter-zaspel.de\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.peter-zaspel.de\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=24"}],"version-history":[{"count":56,"href":"https:\/\/www.peter-zaspel.de\/index.php?rest_route=\/wp\/v2\/pages\/24\/revisions"}],"predecessor-version":[{"id":1676,"href":"https:\/\/www.peter-zaspel.de\/index.php?rest_route=\/wp\/v2\/pages\/24\/revisions\/1676"}],"wp:attachment":[{"href":"https:\/\/www.peter-zaspel.de\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=24"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}